Type: Package
Package: NGCHM
Title: Next Generation Clustered Heat Maps
Version: 1.1.0
Authors@R: c(
    person(c("Bradley", "M"), "Broom", , "bmbroom@mdanderson.org", role = "aut",
           comment = c(ORCID = "0000-0002-0915-3164")),
    person(c("Mary", "A"), "Rohrdanz", , "marohrdanz@mdanderson.org", role = c("ctb", "cre")),
    person("Chris", "Wakefield", , "cwakefield@mdanderson.org", role = "ctb"),
    person(c("James", "M"), "Melott", , "jmmelott@mdanderson.org", role = "ctb"),
    person("MD Anderson Cancer Center", role = "cph")
  )
Description: Next-Generation Clustered Heat Maps (NG-CHMs) allow for
        dynamic exploration of heat map data in a web browser. 'NGCHM'
        allows users to create both stand-alone HTML files containing a
        Next-Generation Clustered Heat Map, and .ngchm files to view in
        the NG-CHM viewer. See Ryan MC, Stucky M, et al (2020)
        <doi:10.12688/f1000research.20590.2> for more details.
License: GPL-3
URL: https://md-anderson-bioinformatics.github.io/NGCHM-R/,
        https://github.com/MD-Anderson-Bioinformatics/NGCHM-R
Depends: R (>= 3.5.0)
Imports: digest, grDevices, htmltools, httr, jsonlite, logger (>=
        0.2.0), methods, stats, tsvio, utils
Suggests: knitr, rmarkdown, Rtsne, testthat, umap, uwot
Enhances: NGCHMDemoData, NGCHMSupportFiles
Additional_repositories:
        https://md-anderson-bioinformatics.r-universe.dev
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Collate: 'panelClasses.R' 'allClasses.R' 'allGenerics.R' 'allMethods.R'
        'chmFromJSON.R' 'dendrogram-fixes.R' 'functions.R'
        'internalFunctions.R' 'ngchmshaidy.R' 'package.R'
        'panelFunctions.R' 'shaidy.R' 'zzz.R'
SystemRequirements: Java (>= 11) Git
Config/pak/sysreqs: git default-jdk libssl-dev
Repository: https://md-anderson-bioinformatics.r-universe.dev
Date/Publication: 2026-04-13 19:47:43 UTC
RemoteUrl: https://github.com/MD-Anderson-Bioinformatics/NGCHM-R
RemoteRef: HEAD
RemoteSha: cb33781450ca1e1f234c3bba03e94510d69e52ec
NeedsCompilation: no
Packaged: 2026-10-16 11:14:54 UTC; root
Author: Bradley M Broom [aut] (ORCID: <https://orcid.org/0000-0002-0915-3164>),
  Mary A Rohrdanz [ctb, cre],
  Chris Wakefield [ctb],
  James M Melott [ctb],
  MD Anderson Cancer Center [cph]
Maintainer: Mary A Rohrdanz <marohrdanz@mdanderson.org>