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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "RPPASPACE" in publications use:'
type: software
license: Artistic-2.0
title: 'RPPASPACE: Reverse-Phase Protein Array Super Position and Concentration Evaluation'
version: 1.0.10
doi: 10.32614/CRAN.package.RPPASPACE
identifiers:
- type: url
  value: https://bioinformatics.mdanderson.org/public-software/rppaspace/
abstract: 'Provides tools for the analysis of reverse-phase protein arrays (RPPAs),
  which are also known as ''tissue lysate arrays'' or simply ''lysate arrays''. The
  package''s primary purpose is to input a set of quantification files representing
  dilution series of samples and control points taken from scanned RPPA slides and
  determine a relative log concentration value for each valid dilution series present
  in each slide and provide graphical visualization of the input and output data and
  their relationships. Other optional features include generation of quality control
  scores for judging the quality of the input data, spatial adjustment of sample points
  based on controls added to the slides, and various types of normalization of calculated
  values across a set of slides. The package was derived from a previous package named
  SuperCurve. For a detailed description of data inputs and outputs, usage information,
  and a list of related papers describing methods used in the package please review
  the vignette ''Guide_to_RPPASPACE''. ''RPPA SPACE: an R package for normalization
  and quantitation of Reverse-Phase Protein Array data''. Bioinformatics Nov 15;38(22):5131-5133.
  <https://doi.org/ 10.1093/bioinformatics/btac665>.'
authors:
- family-names: Melott
  given-names: James M.
  email: jmmelott@mdanderson.org
- family-names: Roebuck
  given-names: Paul L.
- family-names: Coombes
  given-names: Kevin R.
- family-names: Ju
  given-names: Zhenlin
- family-names: Shehwana
  given-names: Huma
- family-names: Kumar
  given-names: Shwetha V.
- family-names: Neeley
  given-names: E. Shannon
- family-names: Joy
  given-names: Corwin
- family-names: Hu
  given-names: Jianhua
- family-names: Baggerly
  given-names: Keith A.
- family-names: Akbani
  given-names: Rehan
  email: RAkbani@mdanderson.org
repository: https://md-anderson-bioinformatics.r-universe.dev
repository-code: https://github.com/MD-Anderson-Bioinformatics/rppaspace
commit: b2d8972ec0801df5ddda3227ec66d2dcd80877f0
url: https://pubmed.ncbi.nlm.nih.gov/36205581
date-released: '2023-10-19'
contact:
- family-names: Melott
  given-names: James M.
  email: jmmelott@mdanderson.org