{ "_id": "6a102566acfb0bcc41c8eb4a", "Type": "Package", "Package": "NGCHM", "Title": "Next Generation Clustered Heat Maps", "Version": "1.1.0", "Authors@R": "c(\nperson(c(\"Bradley\", \"M\"), \"Broom\", , \"bmbroom@mdanderson.org\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-0915-3164\")),\nperson(c(\"Mary\", \"A\"), \"Rohrdanz\", , \"marohrdanz@mdanderson.org\", role = c(\"ctb\", \"cre\")),\nperson(\"Chris\", \"Wakefield\", , \"cwakefield@mdanderson.org\", role = \"ctb\"),\nperson(c(\"James\", \"M\"), \"Melott\", , \"jmmelott@mdanderson.org\", role = \"ctb\"),\nperson(\"MD Anderson Cancer Center\", role = \"cph\")\n)", "Description": "Next-Generation Clustered Heat Maps (NG-CHMs) allow for\ndynamic exploration of heat map data in a web browser. 'NGCHM'\nallows users to create both stand-alone HTML files containing a\nNext-Generation Clustered Heat Map, and .ngchm files to view in\nthe NG-CHM viewer. See Ryan MC, Stucky M, et al (2020)\n for more details.", "License": "GPL-3", "URL": "https://md-anderson-bioinformatics.github.io/NGCHM-R/,\nhttps://github.com/MD-Anderson-Bioinformatics/NGCHM-R", "Additional_repositories": "https://md-anderson-bioinformatics.r-universe.dev", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Collate": "'panelClasses.R' 'allClasses.R' 'allGenerics.R' 'allMethods.R'\n'chmFromJSON.R' 'dendrogram-fixes.R' 'functions.R'\n'internalFunctions.R' 'ngchmshaidy.R' 'package.R'\n'panelFunctions.R' 'shaidy.R' 'zzz.R'", "SystemRequirements": "Java (>= 11) Git", "Config/pak/sysreqs": "git default-jdk libssl-dev", "Repository": "https://md-anderson-bioinformatics.r-universe.dev", "Date/Publication": "2026-04-13 19:47:43 UTC", "RemoteUrl": "https://github.com/MD-Anderson-Bioinformatics/NGCHM-R", "RemoteRef": "HEAD", "RemoteSha": "cb33781450ca1e1f234c3bba03e94510d69e52ec", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-13 09:35:32 UTC", "User": "root" }, "Author": "Bradley M Broom [aut] (ORCID: ),\nMary A Rohrdanz [ctb, cre],\nChris Wakefield [ctb],\nJames M Melott [ctb],\nMD Anderson Cancer Center [cph]", "Maintainer": "Mary A Rohrdanz ", "MD5sum": "d396298d015aca929d208a5fbd57d81b", "_user": "md-anderson-bioinformatics", "_type": "src", "_file": "NGCHM_1.1.0.tar.gz", "_fileid": "9af54e65a314e0f096102239d861fcad4f857e8b5c45b82d04ccf078eb3f88d3", "_filesize": 550087, "_sha256": "9af54e65a314e0f096102239d861fcad4f857e8b5c45b82d04ccf078eb3f88d3", "_created": "2026-05-13T09:35:32.000Z", "_published": "2026-05-22T09:44:06.860Z", "_distro": "noble", "_jobs": [ { "job": 77355080234, "time": 166, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6966615412" }, { "job": 77355080048, "time": 174, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6966618278" }, { "job": 77355080316, "time": 120, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "6966598874" }, { "job": 77355079845, "time": 156, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6966611420" }, { "job": 77355079745, "time": 221, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6966555275" }, { "job": 77355079409, "time": 123, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7157549740" }, { "job": 77355079778, "time": 177, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "6966619637" }, { "job": 77355080409, "time": 163, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "6966614678" }, { "job": 77355080096, "time": 154, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6966611106" } ], "_buildurl": "https://github.com/r-universe/md-anderson-bioinformatics/actions/runs/25790707951", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/MD-Anderson-Bioinformatics/NGCHM-R", "_commit": { "id": "cb33781450ca1e1f234c3bba03e94510d69e52ec", "author": "Mary Rohrdanz ", "committer": "GitHub ", "message": "Merge pull request #79 from MD-Anderson-Bioinformatics/selections-from-r\n\nSelections from R feature request", "time": 1776109663 }, "_maintainer": { "name": "Mary A Rohrdanz", "email": "marohrdanz@mdanderson.org", "login": "marohrdanz", "linkedin": "in/mary-rohrdanz-2597a42a", "uuid": 15746330 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "digest", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "htmltools", "role": "Imports" }, { "package": "httr", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "logger", "version": ">= 0.2.0", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "tsvio", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "Rtsne", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "umap", "role": "Suggests" }, { "package": "uwot", "role": "Suggests" }, { "package": "NGCHMDemoData", "role": "Enhances" }, { "package": "NGCHMSupportFiles", "role": "Enhances" } ], "_owner": "md-anderson-bioinformatics", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-22", "n": 1 }, { "week": "2026-16", "n": 1 } ], "_tags": [ { "name": "v1.0.5", "date": "2026-04-13" } ], "_topics": [ "heatmap", "nci-itcr", "ng-chm" ], "_stars": 9, "_contributors": [ { "user": "bmbroom", "count": 249, "uuid": 1179398 }, { "user": "marohrdanz", "count": 224, "uuid": 15746330 }, { "user": "brownmp", "count": 3, "uuid": 35315693 }, { "user": "chriswakefield", "count": 2, "uuid": 14006681 } ], "_userbio": { "uuid": 24574781, "type": "organization", "name": "MD Anderson Cancer Center - Dept. of Bioinformatics and Computational Biology", "description": "Tools and projects of BCB at MD Anderson Cancer Center" }, "_downloads": { "count": 638, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/NGCHM" }, "_devurl": "https://github.com/md-anderson-bioinformatics/ngchm-r", "_pkgdown": "https://md-anderson-bioinformatics.github.io/NGCHM-R/", "_searchresults": 29, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NGCHM.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/md-anderson-bioinformatics/ngchm-r", "_realowner": "md-anderson-bioinformatics", "_cranurl": true, "_releases": [ { "version": "1.0.1", "date": "2024-01-16" }, { "version": "1.0.2", "date": "2024-03-28" }, { "version": "1.0.3", "date": "2024-05-08" }, { "version": "1.0.4", "date": "2024-12-17" } ], "_exports": [ "chmAdd", "chmAddAxisType", "chmAddColormap", "chmAddCovariate", "chmAddCovariateBar", "chmAddCSS", "chmAddDataset", "chmAddDialog", "chmAddLayer", "chmAddMenuItem", "chmAddMetaData", "chmAddOverview", "chmAddPCA", "chmAddProperty", "chmAddReducedDim", "chmAddRelated", "chmAddRelatedGroup", "chmAddSpecificAxisTypeFunction", "chmAddTag", "chmAddTemplate", "chmAddToolboxR", "chmAddToolboxR2", "chmAddToolboxRC", "chmAddTSNE", "chmAddUMAP", "chmAddUWOT", "chmAxis", "chmAxisType", "chmBindFunction", "chmBrowse", "chmColOrder<-", "chmColorMap", "chmColorMap<-", "chmColors", "chmColors<-", "chmCovariate", "chmCovariateBar", "chmCreateCollection", "chmCreateManagedServer", "chmCreateServer", "chmCurrentCollection", "chmCurrentServer", "chmDefaultColOrder", "chmDefaultRowOrder", "chmDeployServer", "chmExportToFile", "chmExportToHTML", "chmExportToPDF", "chmFieldAccessFunction", "chmGetDataset", "chmGetDeployServerConfig", "chmGetFunction", "chmGetOverview", "chmGetProperty", "chmGetTypeInfo", "chmGetURL", "chmHasProperty", "chmInstall", "chmLabel", "chmLabel<-", "chmLayer", "chmLayer<-", "chmListFunctions", "chmListServers", "chmListTypes", "chmLoadCHM", "chmLoadShaidyCHM", "chmMake", "chmMakePrivate", "chmMakePublic", "chmManager", "chmName", "chmNew", "chmNewColorMap", "chmNewCovariate", "chmNewCovariateBar", "chmNewDataLayer", "chmNewDataset", "chmNewDialog", "chmNewFunction", "chmNewProperty", "chmNewServer", "chmOriginalColOrder", "chmOriginalRowOrder", "chmProperties", "chmProperty", "chmProperty<-", "chmRandomColOrder", "chmRandomRowOrder", "chmRegisterAxisFunction", "chmRegisterFunction", "chmRegisterGetMetadataFunction", "chmRegisterMatrixFunction", "chmRegisterToolboxFunction", "chmRegisterType", "chmRegisterTypeMapper", "chmRegisterTypeSplitter", "chmRowOrder<-", "chmServer", "chmSetCollection", "chmSetCredentials", "chmSetDeployServerConfig", "chmSetDisplayLength", "chmStringopFunction", "chmTreeGaps", "chmUninstall", "chmUrlBase", "chmWriteCustomJS", "detailMap", "getDimensions", "initLogging", "ngchmAddDatasetBlob", "ngchmAddMatrixToCollection", "ngchmAddObjectToCollection", "ngchmCollectionInCollection", "ngchmCollectionTree", "ngchmCreateServerProtocol", "ngchmFindRepo", "ngchmGetDataFileShaid", "ngchmGetEnv", "ngchmGetHandleHTTR", "ngchmGetLabels", "ngchmGetLabelsStr", "ngchmGetProtoParam", "ngchmGetServerProtocol", "ngchmInitShaidyRepository", "ngchmListServerProtocols", "ngchmLoadDatasetBlob", "ngchmNewCollection", "ngchmProtoParamCheck", "ngchmPushSourceRepository", "ngchmPushSourceServer", "ngchmPushTempRepository", "ngchmRegisterServer", "ngchmRenderChm", "ngchmResponseJSON", "ngchmSaveAsDatasetBlob", "ngchmSaveAsDendrogramBlob", "ngchmTileDataset", "ngchmUnregisterServer", "pane", "panel_configuration", "pluginPane", "shaidyAddFileBlob", "shaidyBlobExists", "shaidyCopyBlob", "shaidyFindRepo", "shaidyGetComponents", "shaidyGetShaid", "shaidyInitRepository", "shaidyLoadRepository", "shaidyProvenance", "summaryMap" ], "_help": [ { "page": "addition-methods", "title": "Add an Axis to an NG-CHM Version 2", "topics": [ "+", "+,ngchmVersion2,ngchmAxis-method" ] }, { "page": "cash-.shaidyRepo", "title": "Provide a simpler method for accessing repo methods", "topics": [ "$.shaidyRepo" ] }, { "page": "castAsInteger", "title": "Helper function to cast variables as integers.", "topics": [ "castAsInteger" ] }, { "page": "castListAsInteger", "title": "Helper function to cast list as integer", "topics": [ "castListAsInteger" ] }, { "page": "chmAdd-method", "title": "Add a list of objects to a NGCHM.", "topics": [ "chmAdd", "chmAdd,ngchm-method" ] }, { "page": "chmAddAxisType-method", "title": "Add an axis type to a NGCHM.", "topics": [ "chmAddAxisType", "chmAddAxisType,ngchm,character,character,character-method", "chmAddAxisType,ngchm,character,character,missing-method", "chmAddAxisType,ngchm,character,character,ngchmJS-method" ] }, { "page": "chmAddColormap-method", "title": "Add a colormap to a NGCHM.", "topics": [ "chmAddColormap", "chmAddColormap,ngchm,ngchmColormap-method" ] }, { "page": "chmAddCovariate-method", "title": "Add a covariate to an auxiliary dataset.", "topics": [ "chmAddCovariate", "chmAddCovariate,ngchmDataset,character,ngchmCovariate-method" ] }, { "page": "chmAddCovariateBar-method", "title": "Add a covariate bar to a NGCHM.", "topics": [ "chmAddCovariateBar", "chmAddCovariateBar,ngchm,character,list-method", "chmAddCovariateBar,ngchm,character,ngchmBar-method", "chmAddCovariateBar,ngchm,character,ngchmCovariate-method", "chmAddCovariateBar,ngchm,character,ngchmCovariateBar-method" ] }, { "page": "chmAddCSS-method", "title": "Add custom CSS to a NGCHM.", "topics": [ "chmAddCSS", "chmAddCSS,ngchm,character,character-method", "chmAddCSS,ngchm,character-method" ] }, { "page": "chmAddDataset-method", "title": "Add an auxiliary dataset to a NGCHM.", "topics": [ "chmAddDataset", "chmAddDataset,ngchm,ngchmDataset-method" ] }, { "page": "chmAddDialog-method", "title": "Add an extra dialog to a NGCHM.", "topics": [ "chmAddDialog", "chmAddDialog,ngchm,ngchmDialog-method" ] }, { "page": "chmAddLayer-method", "title": "Add a Layer to a NGCHM.", "topics": [ "chmAddLayer", "chmAddLayer,ngchm,matrix-method", "chmAddLayer,ngchm,ngchmLayer-method" ] }, { "page": "chmAddMenuItem-method", "title": "Add a menu entry to a NGCHM.", "topics": [ "chmAddMenuItem", "chmAddMenuItem,ngchm,character,character,character-method", "chmAddMenuItem,ngchm,character,character,ngchmJS-method" ] }, { "page": "chmAddMetaData-method", "title": "Add MetaData to NG-CHM", "topics": [ "chmAddMetaData", "chmAddMetaData,ngchm,character,character,character-method" ] }, { "page": "chmAddOverview-method", "title": "Generate an overview image of the NGCHM when making it.", "topics": [ "chmAddOverview", "chmAddOverview,ngchm,character,numeric,numeric-method", "chmAddOverview,ngchm,character,optNumeric,optNumeric-method" ] }, { "page": "chmAddPCA", "title": "Add PCA coordinates to an NG-CHM.", "topics": [ "chmAddPCA" ] }, { "page": "chmAddProperty-method", "title": "Add custom property to a NGCHM.", "topics": [ "chmAddProperty", "chmAddProperty,ngchm,character,character-method" ] }, { "page": "chmAddReducedDim", "title": "Add reduced dimension coordinates to an NG-CHM.", "topics": [ "chmAddReducedDim" ] }, { "page": "chmAddRelated-method", "title": "Add a link to related information to the NGCHM.", "topics": [ "chmAddRelated", "chmAddRelated,ngchm,character,character,character-method" ] }, { "page": "chmAddRelatedGroup-method", "title": "Add a group of related links to the NGCHM.", "topics": [ "chmAddRelatedGroup", "chmAddRelatedGroup,ngchm,character,character,character,character-method", "chmAddRelatedGroup,ngchm,character,character,character,missing-method" ] }, { "page": "chmAddSpecificAxisTypeFunction-method", "title": "Add a CHM-specific axis type function to a NGCHM.", "topics": [ "chmAddSpecificAxisTypeFunction", "chmAddSpecificAxisTypeFunction,ngchm,character,character,character,character-method", "chmAddSpecificAxisTypeFunction,ngchm,character,character,character,ngchmJS-method" ] }, { "page": "chmAddTag-method", "title": "Add tags to a NGCHM.", "topics": [ "chmAddTag", "chmAddTag,ngchm,character,character-method", "chmAddTag,ngchm,character-method" ] }, { "page": "chmAddTemplate-method", "title": "Add a file template to the NGCHM.", "topics": [ "chmAddTemplate", "chmAddTemplate,ngchm,charOrFunction,character,optList-method" ] }, { "page": "chmAddToolboxR-method", "title": "Add standard toolbox to an NG-CHM axis", "topics": [ "chmAddToolboxR", "chmAddToolboxR,ngchm,character,character,character,character-method" ] }, { "page": "chmAddToolboxR2-method", "title": "Add Toolbox R2 to NG-CHM", "topics": [ "chmAddToolboxR2", "chmAddToolboxR2,ngchm,character,character,character-method" ] }, { "page": "chmAddToolboxRC-method", "title": "Add Toolbox RC to NG-CHM", "topics": [ "chmAddToolboxRC", "chmAddToolboxRC,ngchm,character,character,character,character-method", "chmAddToolboxRC,ngchm,character,character,character-method" ] }, { "page": "chmAddTSNE", "title": "Add TSNE coordinates to an NG-CHM.", "topics": [ "chmAddTSNE" ] }, { "page": "chmAddUMAP", "title": "Add UMAP coordinates to an NG-CHM.", "topics": [ "chmAddUMAP" ] }, { "page": "chmAddUWOT", "title": "Add UWOT::UMAP coordinates to an NG-CHM.", "topics": [ "chmAddUWOT" ] }, { "page": "chmAxis", "title": "Create a new Axis for adding to an NG-CHM.", "topics": [ "chmAxis" ] }, { "page": "chmAxisType", "title": "Create a new AxisType for adding to an ngchmAxis.", "topics": [ "chmAxisType" ] }, { "page": "chmBindFunction-method", "title": "Bind values to an existing JS function.", "topics": [ "chmBindFunction", "chmBindFunction,character,character,list-method", "chmBindFunction,character,ngchmJS,list-method" ] }, { "page": "chmBrowse", "title": "Browse the NGCHMs on the specified server in the viewer.", "topics": [ "chmBrowse" ] }, { "page": "chmColOrder-method", "title": "Set the column order of data shown in a NGCHM.", "topics": [ "chmColOrder<-", "chmColOrder<-,ngchm,optDendrogram-method" ] }, { "page": "chmColorMap", "title": "Get the color map of an NG-CHM object.", "topics": [ "chmColorMap" ] }, { "page": "chmColorMap-set", "title": "Set the color map of an NG-CHM object", "topics": [ "chmColorMap<-" ] }, { "page": "chmColors", "title": "Get the colors of an ngchmColormap, ngchmLayer, ngchmBar, or ngchmCovariate.", "topics": [ "chmColors" ] }, { "page": "chmColors-set", "title": "Set the colors of an ngchmColormap, ngchmLayer, ngchmBar, or ngchmCovariate.", "topics": [ "chmColors<-" ] }, { "page": "chmCovariate", "title": "Get a covariate attached to an NG-CHM dataset.", "topics": [ "chmCovariate" ] }, { "page": "chmCovariateBar", "title": "Get a covariate bar attached to an NG-CHM.", "topics": [ "chmCovariateBar" ] }, { "page": "chmCreateCollection", "title": "Create a new NG-CHM Collection", "topics": [ "chmCreateCollection" ] }, { "page": "chmCreateManagedServer", "title": "Create an ngchmServer object for a managed NG-CHM server", "topics": [ "chmCreateManagedServer" ] }, { "page": "chmCreateServer", "title": "Create an ngchmServer object from a specification.", "topics": [ "chmCreateServer" ] }, { "page": "chmCurrentCollection", "title": "Get the user's current collection", "topics": [ "chmCurrentCollection" ] }, { "page": "chmCurrentServer", "title": "Get the user's current server", "topics": [ "chmCurrentServer" ] }, { "page": "chmDefaultColOrder", "title": "Return default column order of an NGCHM", "topics": [ "chmDefaultColOrder" ] }, { "page": "chmDefaultRowOrder", "title": "Return default row order of an NGCHM", "topics": [ "chmDefaultRowOrder" ] }, { "page": "chmDeployServer-method", "title": "Get the name of a NGCHM server.", "topics": [ "chmDeployServer", "chmDeployServer,ngchmServer-method" ] }, { "page": "chmExportToFile-method", "title": "Export a standalone NGCHM to a file.", "topics": [ "chmExportToFile" ] }, { "page": "chmExportToHTML-method", "title": "Export a standalone HTML containing the NGCHM to a file.", "topics": [ "chmExportToHTML" ] }, { "page": "chmExportToPDF-method", "title": "Export a PDF of the NGCHM to a file.", "topics": [ "chmExportToPDF" ] }, { "page": "chmFieldAccessFunction", "title": "Get Javascript function name for accessing a specific string field in each element of string vector.", "topics": [ "chmFieldAccessFunction" ] }, { "page": "chmGetDataset-method", "title": "Get the dataset from an NG-CHM object", "topics": [ "chmGetDataset", "chmGetDataset,ngchmLayer-method" ] }, { "page": "chmGetDeployServerConfig", "title": "Get per-user configuration for a specific deploy Server.", "topics": [ "chmGetDeployServerConfig" ] }, { "page": "chmGetFunction", "title": "Get a predefined Javascript function for use in NGCHM menus", "topics": [ "chmGetFunction" ] }, { "page": "chmGetOverview", "title": "Get the file path to the specified overview file.", "topics": [ "chmGetOverview" ] }, { "page": "chmGetProperty-method", "title": "Get Property from NG-CHM", "topics": [ "chmGetProperty", "chmGetProperty,ngchmVersion2,character-method", "chmGetProperty,ngchmVersion2-method" ] }, { "page": "chmGetTypeInfo", "title": "Get information about a type name.", "topics": [ "chmGetTypeInfo" ] }, { "page": "chmGetURL-method", "title": "Get the URL for an installed NGCHM.", "topics": [ "chmGetURL", "chmGetURL,character-method", "chmGetURL,ngchm-method" ] }, { "page": "chmHasProperty-method", "title": "Determine if the NG-CHM has the given property.", "topics": [ "chmHasProperty", "chmHasProperty,ngchmVersion2,character-method", "chmHasProperty,ngchmVersion2-method" ] }, { "page": "chmInstall-method", "title": "Add an NG-CHM to an NG-CHM collection.", "topics": [ "chmInstall", "chmInstall,ngchm-method" ] }, { "page": "chmLabel", "title": "Get the label/name of an NG-CHM object.", "topics": [ "chmLabel" ] }, { "page": "chmLabel-set", "title": "Set the label/name of an NG-CHM object", "topics": [ "chmLabel<-" ] }, { "page": "chmLayer", "title": "Get a specified Data Layer from an NG-CHM.", "topics": [ "chmLayer" ] }, { "page": "chmLayer-set", "title": "Set (or append) a specified Data Layer in an NG-CHM.", "topics": [ "chmLayer<-" ] }, { "page": "chmListFunctions", "title": "List the predefined Javascript functions available for use in NGCHM menus.", "topics": [ "chmListFunctions" ] }, { "page": "chmListServers", "title": "List NG-CHM Servers", "topics": [ "chmListServers" ] }, { "page": "chmListTypes", "title": "List known axis types.", "topics": [ "chmListTypes" ] }, { "page": "chmLoadCHM-method", "title": "Load CHM from NG-CHM server", "topics": [ "chmLoadCHM", "chmLoadCHM,character,character-method", "chmLoadCHM,character,missing-method", "chmLoadCHM,ngchmServer,character-method" ] }, { "page": "chmLoadShaidyCHM", "title": "Load an NG-CHM from an NG-CHM server.", "topics": [ "chmLoadShaidyCHM" ] }, { "page": "chmMake-method", "title": "Compile a NGCHM.", "topics": [ "chmMake", "chmMake,ngchm-method" ] }, { "page": "chmMakePrivate-method", "title": "Make NG-CHM Private on Server", "topics": [ "chmMakePrivate", "chmMakePrivate,character,character-method", "chmMakePrivate,character,ngchm-method", "chmMakePrivate,ngchmServer,character-method", "chmMakePrivate,ngchmServer,ngchm-method" ] }, { "page": "chmMakePublic-method", "title": "Make NG-CHM Public on Server", "topics": [ "chmMakePublic", "chmMakePublic,character,character-method", "chmMakePublic,character,ngchm-method", "chmMakePublic,ngchmServer,character-method", "chmMakePublic,ngchmServer,ngchm-method" ] }, { "page": "chmManager", "title": "Open the NG-CHM Manager", "topics": [ "chmManager" ] }, { "page": "chmName-method", "title": "Get the name of a NGCHM.", "topics": [ "chmName", "chmName,ngchm-method" ] }, { "page": "chmNew", "title": "Create a new NGCHM.", "topics": [ "chmNew" ] }, { "page": "chmNewColorMap", "title": "Create a new Color Map for use in constructing a NGCHM", "topics": [ "chmNewColorMap" ] }, { "page": "chmNewCovariate", "title": "Create a new Covariate for adding to an NGCHM auxilary dataset.", "topics": [ "chmNewCovariate" ] }, { "page": "chmNewCovariateBar", "title": "Create a new covariate Bar for a NGCHM", "topics": [ "chmNewCovariateBar" ] }, { "page": "chmNewDataLayer", "title": "Create a new Data Layer for a NGCHM.", "topics": [ "chmNewDataLayer" ] }, { "page": "chmNewDataset", "title": "Create a new Dataset for a NGCHM.", "topics": [ "chmNewDataset" ] }, { "page": "chmNewDialog", "title": "Create a new Dialog for a NGCHM.", "topics": [ "chmNewDialog" ] }, { "page": "chmNewFunction", "title": "Create a new Javascript function for adding to a NGCHM menu.", "topics": [ "chmNewFunction" ] }, { "page": "chmNewProperty", "title": "Create a new Property for adding to a NGCHM.", "topics": [ "chmNewProperty" ] }, { "page": "chmNewServer", "title": "Create a new object representing a NGCHM server.", "topics": [ "chmNewServer" ] }, { "page": "chmOriginalColOrder", "title": "Return original column order of an NGCHM", "topics": [ "chmOriginalColOrder" ] }, { "page": "chmOriginalRowOrder", "title": "Return original row order of an NGCHM", "topics": [ "chmOriginalRowOrder" ] }, { "page": "chmProperties", "title": "Create NG-CHM Properties", "topics": [ "chmProperties" ] }, { "page": "chmProperty", "title": "Get the value of an NG-CHM property.", "topics": [ "chmProperty" ] }, { "page": "chmProperty-set", "title": "Set the value of an NG-CHM property.", "topics": [ "chmProperty<-" ] }, { "page": "chmRandomColOrder", "title": "Return random column order of an NGCHM", "topics": [ "chmRandomColOrder" ] }, { "page": "chmRandomRowOrder", "title": "Return random row order of an NGCHM", "topics": [ "chmRandomRowOrder" ] }, { "page": "chmRegisterAxisFunction", "title": "Register a predefined Javascript function for use in NGCHM Axis menus.", "topics": [ "chmRegisterAxisFunction" ] }, { "page": "chmRegisterFunction", "title": "Register a predefined Javascript function for use in NGCHM menus.", "topics": [ "chmRegisterFunction" ] }, { "page": "chmRegisterGetMetadataFunction", "title": "Define and register a Javascript function for obtaining a specific metadata value.", "topics": [ "chmRegisterGetMetadataFunction" ] }, { "page": "chmRegisterMatrixFunction", "title": "Register a predefined Javascript function for use in NGCHM Matrix menus.", "topics": [ "chmRegisterMatrixFunction" ] }, { "page": "chmRegisterToolboxFunction", "title": "Register a Javascript function for use in the NGCHM toolbox.", "topics": [ "chmRegisterToolboxFunction" ] }, { "page": "chmRegisterType", "title": "Register a type name.", "topics": [ "chmRegisterType" ] }, { "page": "chmRegisterTypeMapper", "title": "Register a predefined Javascript function for converting values from one type to another.", "topics": [ "chmRegisterTypeMapper" ] }, { "page": "chmRegisterTypeSplitter", "title": "Define and register a Javascript function for converting a lists of type values into single values.", "topics": [ "chmRegisterTypeSplitter" ] }, { "page": "chmRowOrder-method", "title": "Set the row order of data shown in a NGCHM.", "topics": [ "chmRowOrder<-", "chmRowOrder<-,ngchm,optDendrogram-method" ] }, { "page": "chmServer", "title": "Get a registered ngchmServer object for use in making and installing NGCHMs", "topics": [ "chmServer" ] }, { "page": "chmSetCollection", "title": "Set the user's current server and/or collection", "topics": [ "chmSetCollection" ] }, { "page": "chmSetCredentials-method", "title": "Set Access Credentials for NG-CHM Server", "topics": [ "chmSetCredentials", "chmSetCredentials,character,character-method", "chmSetCredentials,ngchmServer,character-method" ] }, { "page": "chmSetDeployServerConfig", "title": "Specify per-user configuration for a specific deploy Server.", "topics": [ "chmSetDeployServerConfig" ] }, { "page": "chmSetDisplayLength-method", "title": "Set number of characters to display for row or column labels", "topics": [ "chmSetDisplayLength", "chmSetDisplayLength,ngchmVersion2-method" ] }, { "page": "chmStringopFunction", "title": "Get Javascript function name for performing a specific string operation on each element of a string vector.", "topics": [ "chmStringopFunction" ] }, { "page": "chmTreeGaps", "title": "Creates new treeCuts object", "topics": [ "chmTreeGaps" ] }, { "page": "chmUninstall-method", "title": "Remove an NG-CHM from Server", "topics": [ "chmUninstall", "chmUninstall,character-method", "chmUninstall,ngchm-method" ] }, { "page": "chmUrlBase-method", "title": "Get the base URL for a NGCHM installed on a NGCHM server.", "topics": [ "chmUrlBase", "chmUrlBase,ngchmServer-method" ] }, { "page": "chmWriteCustomJS", "title": "Output Javascript code required to customize an NGCHM.", "topics": [ "chmWriteCustomJS" ] }, { "page": "container-class", "title": "Container Class for Panel Layout", "topics": [ "container-class" ] }, { "page": "detailMap", "title": "Create a detail map pane", "topics": [ "detailMap" ] }, { "page": "detailMap-class", "title": "Detail Map Class for NG-CHM Layout", "topics": [ "detailMap-class" ] }, { "page": "getDimensions-method", "title": "Generic method to get a dimensions matrix from obj.", "topics": [ "getDimensions", "getDimensions,prcomp", "getDimensions,Seurat", "getDimensions,umap", "getDimensions.default", "getDimensions.prcomp", "getDimensions.Seurat", "getDimensions.umap" ] }, { "page": "gitHashObject", "title": "Obtain the git hash of an existing file.", "topics": [ "gitHashObject" ] }, { "page": "initLogging", "title": "Initialize Logging", "topics": [ "initLogging" ] }, { "page": "NGCHM-package", "title": "Next Generation Clustered Heat Map (NGCHM) Construction Library", "topics": [ "NGCHM-package", "NGCHM" ] }, { "page": "ngchm-class", "title": "Class representing a Next Generation Clustered Heat Map (NGCHM) under construction.", "topics": [ "ngchm-class" ] }, { "page": "NGCHM-functions", "title": "Javascript extensions for the Next Generation Clustered Heat Map (NGCHM) Construction Library", "topics": [ "NGCHM-functions" ] }, { "page": "NGCHM-initialization", "title": "Initialization of the NGCHM library.", "topics": [ "NGCHM-initialization" ] }, { "page": "ngchmAddDatasetBlob", "title": "Add a data file to a local shaidy repository", "topics": [ "ngchmAddDatasetBlob" ] }, { "page": "ngchmAddMatrixToCollection", "title": "Add a matrix reference to a collection", "topics": [ "ngchmAddMatrixToCollection" ] }, { "page": "ngchmAddObjectToCollection", "title": "Add an object reference to a collection", "topics": [ "ngchmAddObjectToCollection" ] }, { "page": "ngchmAxis-class", "title": "Class representing an axis of a Next Generation Clustered Heat Map (NG-CHM).", "topics": [ "ngchmAxis-class" ] }, { "page": "ngchmAxisFunction-class", "title": "Class representing an axis function for Next Generation Clustered Heat Map (NGCHM).", "topics": [ "ngchmAxisFunction-class" ] }, { "page": "ngchmAxisType-class", "title": "Class representing a type attached to an axis in a Next Generation Clustered Heat Map (NGCHM).", "topics": [ "ngchmAxisType-class" ] }, { "page": "ngchmBar-class", "title": "Class representing a Covariate Bar on a Next Generation Clustered Heat Map (NGCHM).", "topics": [ "ngchmBar-class" ] }, { "page": "ngchmCollectionInCollection", "title": "Recursively determine if collection uuid is contained in collection A collecton always contains itself.", "topics": [ "ngchmCollectionInCollection" ] }, { "page": "ngchmCollectionTree", "title": "Create a recursive description of a collection", "topics": [ "ngchmCollectionTree" ] }, { "page": "ngchmColormap-class", "title": "Class representing a Color Map on a Next Generation Clustered Heat Map (NGCHM).", "topics": [ "ngchmColormap-class" ] }, { "page": "ngchmCovariate-class", "title": "Class representing a Covariate attached to a Dataset", "topics": [ "ngchmCovariate-class" ] }, { "page": "ngchmCreateServerProtocol", "title": "Create and register an NGCHM server protocol implementation.", "topics": [ "ngchmCreateServerProtocol" ] }, { "page": "ngchmCSS-class", "title": "Class representing custom CSS for a Next Generation Clustered Heat Map (NGCHM).", "topics": [ "ngchmCSS-class" ] }, { "page": "ngchmDataset-class", "title": "Class representing a Dataset attached to a NGCHM", "topics": [ "ngchmDataset-class" ] }, { "page": "ngchmDialog-class", "title": "Class representing an addon dialog", "topics": [ "ngchmDialog-class" ] }, { "page": "ngchmFindRepo", "title": "Find a repository, if any, that contains the requested shaid", "topics": [ "ngchmFindRepo" ] }, { "page": "ngchmGetDataFileShaid", "title": "Compute shaid for a data file", "topics": [ "ngchmGetDataFileShaid" ] }, { "page": "ngchmGetEnv", "title": "Get the ngchm environment (for debugging only).", "topics": [ "ngchmGetEnv" ] }, { "page": "ngchmGetHandleHTTR", "title": "Get a HTTR handle for the server's view/WS URL", "topics": [ "ngchmGetHandleHTTR" ] }, { "page": "ngchmGetLabels", "title": "Get the axis labels of a shaidy dataset or dendrogram", "topics": [ "ngchmGetLabels" ] }, { "page": "ngchmGetLabelsStr", "title": "Get the axis labels of a shaidy dataset or dendrogram", "topics": [ "ngchmGetLabelsStr" ] }, { "page": "ngchmGetProtoParam", "title": "Get Protocol Parameter for NG-CHM Server", "topics": [ "ngchmGetProtoParam" ] }, { "page": "ngchmGetServerProtocol", "title": "Get Server Protocol for NG-CHM", "topics": [ "ngchmGetServerProtocol" ] }, { "page": "ngchmInitShaidyRepository", "title": "Initialize Shaidy Repository for NG-CHM", "topics": [ "ngchmInitShaidyRepository" ] }, { "page": "ngchmJS-class", "title": "Class representing a custom Javascript function for a Next Generation Clustered Heat Map (NGCHM).", "topics": [ "ngchmJS-class" ] }, { "page": "ngchmLayer-class", "title": "Class representing a Layer on a Next Generation Clustered Heat Map (NGCHM).", "topics": [ "ngchmLayer-class" ] }, { "page": "ngchmListServerProtocols", "title": "List defined server protocols", "topics": [ "ngchmListServerProtocols" ] }, { "page": "ngchmLoadDatasetBlob", "title": "Load a data matrix from a local shaidy repository", "topics": [ "ngchmLoadDatasetBlob" ] }, { "page": "ngchmMakeFormat.original", "title": "Make an original format NGCHM.", "topics": [ "ngchmMakeFormat.original" ] }, { "page": "ngchmMakeFormat.shaidy", "title": "Make a shaidy format NGCHM.", "topics": [ "ngchmMakeFormat.shaidy" ] }, { "page": "ngchmMatrixFunction-class", "title": "Class representing a matrix function for Next Generation Clustered Heat Map (NGCHM).", "topics": [ "ngchmMatrixFunction-class" ] }, { "page": "ngchmMenuItem-class", "title": "Class representing a Menu Item for a Next Generation Clustered Heat Map (NGCHM).", "topics": [ "ngchmMenuItem-class" ] }, { "page": "ngchmMetaData-class", "title": "Class representing meta data attached to an NG-CHM", "topics": [ "ngchmMetaData-class" ] }, { "page": "ngchmNewBar", "title": "Create a new Classification Bar for a NGCHM", "topics": [ "ngchmNewBar" ] }, { "page": "ngchmNewCollection", "title": "Create a new collection in a local shaidy repository", "topics": [ "ngchmNewCollection" ] }, { "page": "ngchmOverview-class", "title": "Class representing an overview of a Next Generation Clustered Heat Map (NGCHM).", "topics": [ "ngchmOverview-class" ] }, { "page": "ngchmProperty-class", "title": "Class representing a Generic Property for a Next Generation Clustered Heat Map (NGCHM).", "topics": [ "ngchmProperty-class" ] }, { "page": "ngchmProtoParamCheck", "title": "Check Protocol Parameters for NG-CHM", "topics": [ "ngchmProtoParamCheck" ] }, { "page": "ngchmPushSourceRepository", "title": "Push a local shaidy repository onto the stack of source repositories", "topics": [ "ngchmPushSourceRepository" ] }, { "page": "ngchmPushSourceServer", "title": "Push a shaidy server onto the stack of source repositories", "topics": [ "ngchmPushSourceServer" ] }, { "page": "ngchmPushTempRepository", "title": "Push Temporary Repository for NG-CHM", "topics": [ "ngchmPushTempRepository" ] }, { "page": "ngchmRegisterServer", "title": "Register an ngchmServer.", "topics": [ "ngchmRegisterServer" ] }, { "page": "ngchmRelated-class", "title": "Class representing a link related to a NGCHM", "topics": [ "ngchmRelated-class" ] }, { "page": "ngchmRelatedGroup-class", "title": "Class representing a group of related links to a NGCHM", "topics": [ "ngchmRelatedGroup-class" ] }, { "page": "ngchmRenderChm", "title": "Render a shaidy NGCHM", "topics": [ "ngchmRenderChm" ] }, { "page": "ngchmResponseJSON", "title": "Return response content interpreted as JSON", "topics": [ "ngchmResponseJSON" ] }, { "page": "ngchmRowCenter", "title": "Row center a shaidy dataset", "topics": [ "ngchmRowCenter" ] }, { "page": "ngchmSaveAsDatasetBlob", "title": "Save a numeric matrix as a blob in a shaidy repository", "topics": [ "ngchmSaveAsDatasetBlob" ] }, { "page": "ngchmSaveAsDendrogramBlob", "title": "Save a dendrogram as a blob in a shaidy repository", "topics": [ "ngchmSaveAsDendrogramBlob" ] }, { "page": "ngchmSaveChmAsBlob", "title": "Save an NGCHM as a shaidy blob", "topics": [ "ngchmSaveChmAsBlob" ] }, { "page": "ngchmServer-class", "title": "Class representing a Next Generation Clustered Heat Map (NGCHM) server.", "topics": [ "ngchmServer-class" ] }, { "page": "ngchmServerProtocol-class", "title": "Class representing a deployment method for a Next Generation Clustered Heat Map (NGCHM) server.", "topics": [ "ngchmServerProtocol-class" ] }, { "page": "ngchmTemplate-class", "title": "Class representing a Template attached to a NGCHM", "topics": [ "ngchmTemplate-class" ] }, { "page": "ngchmTileDataset", "title": "Get the tiles for a shaidy dataset", "topics": [ "ngchmTileDataset" ] }, { "page": "ngchmTypeMapper-class", "title": "Class representing a type mapper function for Next Generation Clustered Heat Map (NGCHM).", "topics": [ "ngchmTypeMapper-class" ] }, { "page": "ngchmUnregisterServer", "title": "Unregister NG-CHM Server", "topics": [ "ngchmUnregisterServer" ] }, { "page": "ngchmValueProp-class", "title": "Class representing the properties of a data point in a Next Generation Clustered Heat Map (NGCHM).", "topics": [ "ngchmValueProp-class" ] }, { "page": "ngchmVersion2-class", "title": "Class representing ngchmVersion2 object", "topics": [ "ngchmVersion2-class" ] }, { "page": "optDendrogram-class", "title": "Optional Dendrogram", "topics": [ "optDendrogram-class" ] }, { "page": "pane", "title": "Create a pane for NG-CHM layout", "topics": [ "pane" ] }, { "page": "pane-class", "title": "Pane Class for NG-CHM Layout", "topics": [ "pane-class" ] }, { "page": "panel_configuration", "title": "Constructor for panel_configuration", "topics": [ "panel_configuration" ] }, { "page": "panel_configuration-class", "title": "Panel Configuration Class for NG-CHM", "topics": [ "panel_configuration-class" ] }, { "page": "plot.ngchmVersion2", "title": "Open the NG-CHM on the specified server in the viewer.", "topics": [ "plot.ngchmVersion2" ] }, { "page": "pluginPane", "title": "Create a plugin pane for NG-CHM layout", "topics": [ "pluginPane" ] }, { "page": "pluginPane-class", "title": "Plugin Pane Class for NG-CHM Layout", "topics": [ "pluginPane-class" ] }, { "page": "print.ngchm.type.info", "title": "Pretty Print NGCHM Type Information", "topics": [ "print.ngchm.type.info" ] }, { "page": "print.shaidyRepo", "title": "Print a shaidy repository", "topics": [ "print.shaidyRepo" ] }, { "page": "shaid-class", "title": "Class representing the shaid of an object", "topics": [ "shaid-class" ] }, { "page": "shaidyAddFileBlob", "title": "Add data file(s) and properties to a local shaidy repository", "topics": [ "shaidyAddFileBlob" ] }, { "page": "shaidyBlobExists", "title": "Determine if one more blobs exist in a shaidy repository", "topics": [ "shaidyBlobExists" ] }, { "page": "shaidyCopyBlob", "title": "Copy a blob from one repository to another", "topics": [ "shaidyCopyBlob" ] }, { "page": "shaidyCreateProtoBlob", "title": "Create a prototype blob in a shaidy repository", "topics": [ "shaidyCreateProtoBlob" ] }, { "page": "shaidyFinalizeProtoBlob", "title": "Finalize a prototype blob", "topics": [ "shaidyFinalizeProtoBlob" ] }, { "page": "shaidyFindRepo", "title": "Find the first repository, if any, that contains the requested shaid", "topics": [ "shaidyFindRepo" ] }, { "page": "shaidyGetComponents-method", "title": "Get an object's component shaids", "topics": [ "shaidyGetComponents", "shaidyGetComponents,ngchm-method", "shaidyGetComponents,ngchmCovariate-method", "shaidyGetComponents,ngchmDataset-method" ] }, { "page": "shaidyGetShaid-method", "title": "Get shaid for an object", "topics": [ "shaidyGetShaid", "shaidyGetShaid,ngchm-method" ] }, { "page": "shaidyHashProtoBlob", "title": "Compute the shaid to assign a protoblob", "topics": [ "shaidyHashProtoBlob" ] }, { "page": "shaidyInitRepository", "title": "Create and initialize Shaidy Repository", "topics": [ "shaidyInitRepository" ] }, { "page": "shaidyLoadProvenanceDB", "title": "Load the provid -> shaid DB for a local shaidy repository", "topics": [ "shaidyLoadProvenanceDB" ] }, { "page": "shaidyLoadProvidDB", "title": "Load the provid -> labels DB for a local shaidy repository.", "topics": [ "shaidyLoadProvidDB" ] }, { "page": "shaidyLoadRepository", "title": "Load a shaidy repository", "topics": [ "shaidyLoadRepository" ] }, { "page": "shaidyNewCache", "title": "Create in memory shaid cache", "topics": [ "shaidyNewCache" ] }, { "page": "shaidyProvenance", "title": "Create a provid from a list of label values", "topics": [ "shaidyProvenance" ] }, { "page": "shaidyRepoAPI", "title": "Get the methods for the repository API called api", "topics": [ "shaidyRepoAPI" ] }, { "page": "summaryMap", "title": "Create a summary map pane", "topics": [ "summaryMap" ] }, { "page": "summaryMap-class", "title": "summaryMap class", "topics": [ "summaryMap-class" ] }, { "page": "treeCuts-class", "title": "Helper class for setting row/col gap locations as tree cuts", "topics": [ "treeCuts-class" ] }, { "page": "verifyNumeric", "title": "Helper function to verify if variable is numeric.", "topics": [ "verifyNumeric" ] } ], "_readme": "https://github.com/MD-Anderson-Bioinformatics/NGCHM-R/raw/HEAD/README.md", "_rundeps": [ "askpass", "base64enc", "curl", "digest", "fastmap", "htmltools", "httr", "jsonlite", "logger", "mime", "openssl", "R6", "rlang", "sys", "tsvio" ], "_score": 4.893761762057943, "_indexed": true, "_nocasepkg": "ngchm", "_universes": [ "md-anderson-bioinformatics", "marohrdanz" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-05-13T09:38:08.000Z", "distro": "noble", "commit": "cb33781450ca1e1f234c3bba03e94510d69e52ec", "fileid": "948e0cef23910acbe64299feff3b2554b8461b14ce26124be0d6655ba81ee75a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/md-anderson-bioinformatics/actions/runs/25790707951" }, { "r": "4.6.0", "os": "linux", "version": "1.1.0", "date": "2026-05-13T09:38:16.000Z", "distro": "noble", "commit": "cb33781450ca1e1f234c3bba03e94510d69e52ec", "fileid": "08d4814f44b8312c017824e81e0a4c15bf81f7e22cfa8aa0f6a6b6eefacdc826", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/md-anderson-bioinformatics/actions/runs/25790707951" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-05-13T09:37:28.000Z", "commit": "cb33781450ca1e1f234c3bba03e94510d69e52ec", "fileid": "53973033e4a29481d5db843e59b41e59a1ec6a6e8c8e6c3caf1cc669eadf303b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/md-anderson-bioinformatics/actions/runs/25790707951" }, { "r": "4.6.0", "os": "mac", "version": "1.1.0", "date": "2026-05-13T09:37:50.000Z", "commit": "cb33781450ca1e1f234c3bba03e94510d69e52ec", "fileid": "60fd608816dbde94b0133bb70b5b07ec97922e93d4bd4123617d7e482774b80c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/md-anderson-bioinformatics/actions/runs/25790707951" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-05-13T09:37:22.000Z", "commit": "cb33781450ca1e1f234c3bba03e94510d69e52ec", "fileid": "56b40a767cf4299eb4e337290749821b92ec96003b34666a04b50bda86b23b1d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/md-anderson-bioinformatics/actions/runs/25790707951" }, { "r": "4.5.3", "os": "win", "version": "1.1.0", "date": "2026-05-13T09:37:15.000Z", "commit": "cb33781450ca1e1f234c3bba03e94510d69e52ec", "fileid": "53091c2db2517384a32b13130d834081cf22697d1b436e788dee4ed2f4bb5217", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/md-anderson-bioinformatics/actions/runs/25790707951" }, { "r": "4.6.0", "os": "win", "version": "1.1.0", "date": "2026-05-13T09:37:06.000Z", "commit": "cb33781450ca1e1f234c3bba03e94510d69e52ec", "fileid": "a18fc1c524930e28c180be08c1fb66335ea817e8d60abe23cb90a67dae999e0b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/md-anderson-bioinformatics/actions/runs/25790707951" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0", "date": "2026-05-22T09:43:50.000Z", "commit": "cb33781450ca1e1f234c3bba03e94510d69e52ec", "fileid": "c63f7f978474c7a140edd6ed0d10f374bddaebb182759124d95c4ba197f8cf0d", "status": "success", "buildurl": "https://github.com/r-universe/md-anderson-bioinformatics/actions/runs/25790707951" } ] }